• CMfinder

  • Referenced in 6 articles [sw17265]
  • expectation maximization algorithm using covariance models for motif description, featuring novel integration of multiple techniques ... effective search of motif space, and a Bayesian framework that blends mutual information-based ... large indels, our method demonstrates excellent average per-base-pair accuracy—79% compared with ... alternative methods. More importantly, the resulting probabilistic model can be directly used for homology search...
  • Rgbp

  • Referenced in 2 articles [sw18040]
  • models on overdispersed Gaussian, Poisson, and Binomial data and evaluates whether the resulting approximate Bayesian ... average or a proportion of each group, without population-level data. The approximate Bayesian tool ... produces approximate point and interval estimates for model parameters including second-level variance component, regression...
  • MTS

  • Referenced in 4 articles [sw15485]
  • average volatility, Cholesky decomposition volatility models, dynamic conditional correlation (DCC) models, copula-based volatility models ... dimensional BEKK models. The package also considers multiple tests for conditional heteroscedasticity, including rank-based ... forecasting using diffusion index, transfer function analysis, Bayesian estimation of VAR models, and multivariate time...
  • parallelMCMCcombine

  • Referenced in 3 articles [sw21115]
  • package, including averaging across subset samples, weighted averaging across subsets samples, and kernel smoothing across ... assume the user has previously run the Bayesian analysis and has produced the independent subposterior ... been demonstrated to be useful for Bayesian MCMC models including Bayesian logistic regression, Bayesian Gaussian...
  • AICcmodavg

  • Referenced in 2 articles [sw17768]
  • well as a shrinkage version of model averaging parameter estimates or effect sizes. The package ... goodness-of-fit statistics for certain model types including those of ’unmarkedFit’ classes estimating demographic ... also allow the creation of model selection tables for Bayesian models of the ’bugs...
  • BayesPostEst

  • Referenced in 1 article [sw31515]
  • plot postestimation quantities after estimating Bayesian regression models using Markov chain Monte Carlo (MCMC). Functionality ... /j.1540-5907.2012.00602.x>, the implementation of the average value method of calculating predicted probabilities (see King, Tomz ... used with MCMC output generated by any Bayesian estimation tool including ’JAGS’, ’BUGS’, ’MCMCpack...
  • FlowPM

  • Referenced in 1 article [sw36361]
  • python based PM code, finding on an average 10x speed-up in terms of wallclock ... cosmological fields in a forward model Bayesian framework with hybrid PM and neural network forward...
  • BLNN

  • Referenced in 1 article [sw32579]
  • neural networks with a breadth of Bayesian sampling techniques for the first time ... Turn (NUTS) sampling algorithms with dual averaging for posterior weight generation. A robust implementation ... applications which are based on developing statistical models such as multiple linear and logistic regression...
  • BOIN

  • Referenced in 0 articles [sw16273]
  • package BOIN. The Bayesian optimal interval (BOIN) design is a novel phase I clinical trial ... design. The BOIN design yields an average performance that is comparable to that ... reassessment method (CRM, one of the best model-based designs) in terms of selecting...
  • ANSYS

  • Referenced in 655 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • ATLAS

  • Referenced in 197 articles [sw00056]
  • This paper describes the Automatically Tuned Linear Algebra...
  • CGAL

  • Referenced in 355 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • ESTIMA

  • Referenced in 15 articles [sw00249]
  • System identification is an iterative model building process...
  • gretl

  • Referenced in 17 articles [sw00386]
  • gretl: Gnu Regression, Econometrics and Time-series Library...
  • LAPACK

  • Referenced in 1626 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Maple

  • Referenced in 5040 articles [sw00545]
  • The result of over 30 years of cutting...
  • MapReduce

  • Referenced in 250 articles [sw00546]
  • MapReduce is a new parallel programming model initially...
  • Mathematica

  • Referenced in 5883 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 12074 articles [sw00558]
  • MATLAB® is a high-level language and interactive...